Index

A

adiabatic_phase_differences() (in module magnus.avgprob) adiabatic_propagator() (in module magnus.adiabatic) ALWAYS_FORWARD (in module magnus.cli) averaged_probabilities_adiabatic() (in module magnus.avgprob)

averaged_probabilities_constant_hamiltonian() (in module magnus.avgprob) averaged_probabilities_from_eigenbasis() (in module magnus.avgprob) averaged_probabilities_numerically() (in module magnus.avgprob) AVG_DEFAULT_ENERGY_SPREAD (in module magnus.avgprob) AVG_DEFAULT_N_SAMPLES (in module magnus.avgprob)

B

B (in module magnus.magnus) B1 (in module magnus.globaldefs) B2 (in module magnus.globaldefs) B3 (in module magnus.globaldefs)

BATCH_WORKING_ENTRIES (in module magnus.oscprob) bernoulli() (in module magnus.expansionterms) bernoulli_factor() (in module magnus.expansionterms) build_parser() (in module magnus.cli)

C

cached_eval_mode() (in module magnus.magnus) CBEIGE (magnus.globaldefs.cstyle attribute) CBEIGE2 (magnus.globaldefs.cstyle attribute) CBEIGEBG (magnus.globaldefs.cstyle attribute) CBEIGEBG2 (magnus.globaldefs.cstyle attribute) CBLACK (magnus.globaldefs.cstyle attribute) CBLACKBG (magnus.globaldefs.cstyle attribute) CBLINK (magnus.globaldefs.cstyle attribute) CBLINK2 (magnus.globaldefs.cstyle attribute) CBLUE (magnus.globaldefs.cstyle attribute) CBLUE2 (magnus.globaldefs.cstyle attribute) CBLUEBG (magnus.globaldefs.cstyle attribute) CBLUEBG2 (magnus.globaldefs.cstyle attribute) CBOLD (magnus.globaldefs.cstyle attribute) CEND (magnus.globaldefs.cstyle attribute) CGREEN (magnus.globaldefs.cstyle attribute) CGREEN2 (magnus.globaldefs.cstyle attribute) CGREENBG (magnus.globaldefs.cstyle attribute) CGREENBG2 (magnus.globaldefs.cstyle attribute) CGREY (magnus.globaldefs.cstyle attribute) CGREYBG (magnus.globaldefs.cstyle attribute) chord_length_inside_earth() (in module magnus.earth) CITALIC (magnus.globaldefs.cstyle attribute) coherence_blocks() (in module magnus.avgprob) COHERENCE_PHASE_THRESHOLD (in module magnus.avgprob) coherence_report() (in module magnus.avgprob) commutator() (in module magnus.magnus) compute_evolution_operator() (in module magnus.oscprob) compute_evolution_operator_multiple_slabs() (in module magnus.oscprob) CONV_CM3_TO_INV_EV3 (in module magnus.globaldefs)

CONV_CM_TO_INV_EV (in module magnus.globaldefs) CONV_EV_TO_G (in module magnus.globaldefs) CONV_G_TO_EV (in module magnus.globaldefs) CONV_INV_EV_TO_CM (in module magnus.globaldefs) CONV_KM_TO_INV_EV (in module magnus.globaldefs) coordinates_of_named_location() (in module magnus.earth) costhz_between_points_on_surface() (in module magnus.earth) count_terms() (in module magnus.expansionterms) CRED (magnus.globaldefs.cstyle attribute) CRED2 (magnus.globaldefs.cstyle attribute) CREDBG (magnus.globaldefs.cstyle attribute) CREDBG2 (magnus.globaldefs.cstyle attribute) cross_check_strategies() (in module magnus.oscprob) CrossCheckInconclusiveWarning CSELECTED (magnus.globaldefs.cstyle attribute) cstyle (class in magnus.globaldefs) CUMULATIVE_AUTO_MIN_POINTS (in module magnus.oscprob) CUMULATIVE_N_ACC_SAFETY (in module magnus.oscprob) CURL (magnus.globaldefs.cstyle attribute) CVIOLET (magnus.globaldefs.cstyle attribute) CVIOLET2 (magnus.globaldefs.cstyle attribute) CVIOLETBG (magnus.globaldefs.cstyle attribute) CVIOLETBG2 (magnus.globaldefs.cstyle attribute) CWHITE (magnus.globaldefs.cstyle attribute) CWHITE2 (magnus.globaldefs.cstyle attribute) CWHITEBG (magnus.globaldefs.cstyle attribute) CWHITEBG2 (magnus.globaldefs.cstyle attribute) CYELLOW (magnus.globaldefs.cstyle attribute) CYELLOW2 (magnus.globaldefs.cstyle attribute) CYELLOWBG (magnus.globaldefs.cstyle attribute) CYELLOWBG2 (magnus.globaldefs.cstyle attribute)

D

D21_IO_BF_NUFIT_6_0 (in module magnus.globaldefs) D21_NO_BF_NUFIT_6_0 (in module magnus.globaldefs) D31_IO_BF_NUFIT_6_0 (in module magnus.globaldefs) D31_NO_BF_NUFIT_6_0 (in module magnus.globaldefs) D32_IO_BF_NUFIT_6_0 (in module magnus.globaldefs) DCP_IO_BF_NUFIT_6_0 (in module magnus.globaldefs) DCP_NO_BF_NUFIT_6_0 (in module magnus.globaldefs) DECOHERENCE_PHASE_THRESHOLD (in module magnus.avgprob)

delta() (in module magnus.oscprobstd) DENSITY_MATTER_CRUST_G_PER_CM3 (in module magnus.globaldefs) density_matter_func_const() (in module magnus.matter) density_matter_func_exp() (in module magnus.matter) density_matter_func_prem() (in module magnus.earth) DensityUnitWarning distance_traveled_inside_earth() (in module magnus.earth) dms_to_decimal() (in module magnus.earth) DXICP (in module magnus.globaldefs)

E

earth_radial_distance_from_depth() (in module magnus.earth) EARTH_RADIUS (in module magnus.globaldefs) ELECTRON_FRACTION_EARTH_CRUST (in module magnus.globaldefs) ENERGY_UNITS (in module magnus.cli) ENGINE_FAMILIES (in module magnus.oscprob) EPS_2 (in module magnus.globaldefs) EPS_3 (in module magnus.globaldefs) EPS_EE (in module magnus.globaldefs) EPS_EM (in module magnus.globaldefs)

EPS_ET (in module magnus.globaldefs) EPS_MM (in module magnus.globaldefs) EPS_MT (in module magnus.globaldefs) EPS_TT (in module magnus.globaldefs) ERROR_MSG_IN_COLOR (in module magnus.globaldefs) ERROR_MSG_NO_COLOR (in module magnus.globaldefs) evolution_operators_from_samples() (in module magnus.magnus) exp_density_profile() (in module magnus.matter) EXPM_BACKEND (in module magnus.magnus) expm_herm_stack() (in module magnus.expmkernels)

F

F1 (in module magnus.magnus) f1 (in module magnus.magnus) F2 (in module magnus.magnus) f2 (in module magnus.magnus) find_hidden_features() (in module magnus.adiabatic)

find_nonadiabatic_windows() (in module magnus.adiabatic) find_resonance_candidates() (in module magnus.adiabatic) FLAVOR_LABELS (in module magnus.cli) FLAVOR_NAME_TO_INDEX (in module magnus.cli) format_term() (in module magnus.expansionterms)

G

GAMMA_TO_ERROR (in module magnus.adiabatic)

GF (in module magnus.globaldefs) gl_nodes() (in module magnus.magnus)

H

hamiltonian_2nu_liv() (in module magnus.hamiltonians.hamiltonians2nu) hamiltonian_2nu_liv_energy_independent() (in module magnus.hamiltonians.hamiltonians2nu) hamiltonian_2nu_matter() (in module magnus.hamiltonians.hamiltonians2nu) hamiltonian_2nu_matter_td() (in module magnus.hamiltonians.hamiltonians2nu) hamiltonian_2nu_nsi() (in module magnus.hamiltonians.hamiltonians2nu) hamiltonian_2nu_nsi_td() (in module magnus.hamiltonians.hamiltonians2nu) hamiltonian_2nu_vacuum() (in module magnus.hamiltonians.hamiltonians2nu) hamiltonian_2nu_vacuum_energy_independent() (in module magnus.hamiltonians.hamiltonians2nu) hamiltonian_2nu_vacuum_energy_independent_td() (in module magnus.hamiltonians.hamiltonians2nu) hamiltonian_2nu_vacuum_td() (in module magnus.hamiltonians.hamiltonians2nu) hamiltonian_3nu_liv() (in module magnus.hamiltonians.hamiltonians3nu) hamiltonian_3nu_liv_energy_independent() (in module magnus.hamiltonians.hamiltonians3nu) hamiltonian_3nu_matter() (in module magnus.hamiltonians.hamiltonians3nu) hamiltonian_3nu_matter_td() (in module magnus.hamiltonians.hamiltonians3nu) hamiltonian_3nu_nsi() (in module magnus.hamiltonians.hamiltonians3nu) hamiltonian_3nu_nsi_td() (in module magnus.hamiltonians.hamiltonians3nu) hamiltonian_3nu_vacuum() (in module magnus.hamiltonians.hamiltonians3nu) hamiltonian_3nu_vacuum_energy_independent() (in module magnus.hamiltonians.hamiltonians3nu) hamiltonian_3nu_vacuum_energy_independent_td() (in module magnus.hamiltonians.hamiltonians3nu) hamiltonian_3nu_vacuum_td() (in module magnus.hamiltonians.hamiltonians3nu) hamiltonian_4nu_liv() (in module magnus.hamiltonians.hamiltonians4nu) hamiltonian_4nu_liv_energy_independent() (in module magnus.hamiltonians.hamiltonians4nu) hamiltonian_4nu_matter() (in module magnus.hamiltonians.hamiltonians4nu) hamiltonian_4nu_matter_td() (in module magnus.hamiltonians.hamiltonians4nu) hamiltonian_4nu_nsi() (in module magnus.hamiltonians.hamiltonians4nu)

hamiltonian_4nu_nsi_td() (in module magnus.hamiltonians.hamiltonians4nu) hamiltonian_4nu_vacuum() (in module magnus.hamiltonians.hamiltonians4nu) hamiltonian_4nu_vacuum_energy_independent() (in module magnus.hamiltonians.hamiltonians4nu) hamiltonian_4nu_vacuum_energy_independent_td() (in module magnus.hamiltonians.hamiltonians4nu) hamiltonian_4nu_vacuum_td() (in module magnus.hamiltonians.hamiltonians4nu) hamiltonian_5nu_liv() (in module magnus.hamiltonians.hamiltonians5nu) hamiltonian_5nu_liv_energy_independent() (in module magnus.hamiltonians.hamiltonians5nu) hamiltonian_5nu_matter() (in module magnus.hamiltonians.hamiltonians5nu) hamiltonian_5nu_matter_td() (in module magnus.hamiltonians.hamiltonians5nu) hamiltonian_5nu_nsi() (in module magnus.hamiltonians.hamiltonians5nu) hamiltonian_5nu_vacuum() (in module magnus.hamiltonians.hamiltonians5nu) hamiltonian_5nu_vacuum_energy_independent() (in module magnus.hamiltonians.hamiltonians5nu) hamiltonian_5nu_vacuum_energy_independent_td() (in module magnus.hamiltonians.hamiltonians5nu) hamiltonian_5nu_vacuum_td() (in module magnus.hamiltonians.hamiltonians5nu) HAVE_NUMBA (in module magnus.expmkernels) HIDDEN_FEATURE_CONCENTRATION (in module magnus.adiabatic) HiddenFeatureWarning HOUSE_FIGSIZE (in module magnus.plotting) HOUSE_GRID_KW (in module magnus.plotting) HOUSE_LEGEND_KW (in module magnus.plotting) HOUSE_RESIDUAL_HEIGHT (in module magnus.plotting) HOUSE_SAVEFIG_KW (in module magnus.plotting) hybrid_propagator() (in module magnus.adiabatic) HYBRID_YIELDS_TO_CUMULATIVE_MIN_POINTS (in module magnus.oscprob) HybridCertificationWarning

I

IMPLAUSIBLE_DENSITY_G_PER_CM3 (in module magnus.matter) IMPLAUSIBLE_DENSITY_NATURAL_UNITS (in module magnus.matter)

IP_EXP_LOOP_CAP (in module magnus.oscprob) IP_EXP_N_SLABS_CAP (in module magnus.oscprob)

J

J() (in module magnus.oscprobstd)

L

L_SCALE_SUN (in module magnus.globaldefs) LAMBDA (in module magnus.globaldefs) LENGTH_UNITS (in module magnus.cli)

level_crossing_matrix() (in module magnus.avgprob) load_nufit_params() (in module magnus.globaldefs) loc_coords_dms (in module magnus.earth) LOCAL_JUMP_RATIO (in module magnus.adiabatic)

M

magnus module magnus.adiabatic module magnus.avgprob module magnus.cli module magnus.earth module magnus.expansionterms module magnus.expmkernels module magnus.globaldefs module magnus.hamiltonians module magnus.hamiltonians.hamiltonians2nu module magnus.hamiltonians.hamiltonians3nu module magnus.hamiltonians.hamiltonians4nu module magnus.hamiltonians.hamiltonians5nu module magnus.magnus module magnus.matter module magnus.oscprob module magnus.oscprobstd module magnus.plotting module MAGNUS_EXP_ORDER_MAX (in module magnus.magnus)

magnus_expansion() (in module magnus.magnus) magnus_expansion_multislab() (in module magnus.magnus) MAGNUS_MAX_PREDEFINED_NUM_FLAVORS (in module magnus.globaldefs) magnus_terms() (in module magnus.expansionterms) MagnusConvergenceWarning MagnusHighOrderCostWarning main() (in module magnus.cli) MASS_ELECTRON (in module magnus.globaldefs) MASS_NEUTRON (in module magnus.globaldefs) MASS_PROTON (in module magnus.globaldefs) MatplotlibNotFoundError MAX_LOCAL_CONFIRMATIONS (in module magnus.adiabatic) MAX_N_SLABS_DEFAULT (in module magnus.oscprob) MIN_EFFECTIVE_REFINEMENT (in module magnus.oscprob) mixing_matrix_2nu() (in module magnus.hamiltonians.hamiltonians2nu) mixing_matrix_3x3() (in module magnus.hamiltonians.hamiltonians3nu) mixing_matrix_4x4() (in module magnus.hamiltonians.hamiltonians4nu) mixing_matrix_5x5() (in module magnus.hamiltonians.hamiltonians5nu) module magnus magnus.adiabatic magnus.avgprob magnus.cli magnus.earth magnus.expansionterms magnus.expmkernels magnus.globaldefs magnus.hamiltonians magnus.hamiltonians.hamiltonians2nu magnus.hamiltonians.hamiltonians3nu magnus.hamiltonians.hamiltonians4nu magnus.hamiltonians.hamiltonians5nu magnus.magnus magnus.matter magnus.oscprob magnus.oscprobstd magnus.plotting

N

N_AV (in module magnus.globaldefs) N_HIDDEN_FEATURE_SUBDIVISION (in module magnus.adiabatic) N_LOCAL_CONFIRM (in module magnus.adiabatic) NUE (in module magnus.globaldefs) NUFIT_GLOBAL_FITS (in module magnus.globaldefs) NUM_DENSITY_E_EARTH_CRUST (in module magnus.globaldefs)

num_density_e_func() (in module magnus.matter) NUM_DENSITY_E_SUN_CENTRAL (in module magnus.globaldefs) NUMU (in module magnus.globaldefs) NUS (in module magnus.globaldefs) NUS1 (in module magnus.globaldefs) NUS2 (in module magnus.globaldefs) NUTAU (in module magnus.globaldefs)

O

omega_terms() (in module magnus.expansionterms) ordered_product() (in module magnus.magnus) OSC_PARAMS_NU_FIT_6_0_SK_IO (in module magnus.globaldefs) OSC_PARAMS_NU_FIT_6_0_SK_NO (in module magnus.globaldefs) OSC_PARAMS_PREDEFINED (in module magnus.globaldefs) osc_prob() (in module magnus.oscprob) osc_prob_2nu_earth() (in module magnus.oscprob) osc_prob_2nu_earth_liv() (in module magnus.oscprob) osc_prob_2nu_earth_nsi() (in module magnus.oscprob) osc_prob_2nu_matter_constant_density() (in module magnus.oscprob) osc_prob_2nu_matter_exp_density() (in module magnus.oscprob) osc_prob_2nu_matter_liv_constant_density() (in module magnus.oscprob) osc_prob_2nu_matter_liv_exp_density() (in module magnus.oscprob) osc_prob_2nu_matter_nsi_constant_density() (in module magnus.oscprob) osc_prob_2nu_matter_nsi_exp_density() (in module magnus.oscprob) osc_prob_2nu_matter_std() (in module magnus.oscprobstd) osc_prob_2nu_sun() (in module magnus.oscprob) osc_prob_2nu_sun_liv() (in module magnus.oscprob) osc_prob_2nu_sun_nsi() (in module magnus.oscprob) osc_prob_2nu_vacuum() (in module magnus.oscprob) osc_prob_2nu_vacuum_liv() (in module magnus.oscprob) osc_prob_2nu_vacuum_std() (in module magnus.oscprobstd) osc_prob_3nu_earth() (in module magnus.oscprob) osc_prob_3nu_earth_liv() (in module magnus.oscprob) osc_prob_3nu_earth_nsi() (in module magnus.oscprob) osc_prob_3nu_matter_constant_density() (in module magnus.oscprob) osc_prob_3nu_matter_exp_density() (in module magnus.oscprob) osc_prob_3nu_matter_liv_constant_density() (in module magnus.oscprob) osc_prob_3nu_matter_liv_exp_density() (in module magnus.oscprob) osc_prob_3nu_matter_nsi_constant_density() (in module magnus.oscprob) osc_prob_3nu_matter_nsi_exp_density() (in module magnus.oscprob) osc_prob_3nu_sun() (in module magnus.oscprob) osc_prob_3nu_sun_liv() (in module magnus.oscprob) osc_prob_3nu_sun_nsi() (in module magnus.oscprob) osc_prob_3nu_vacuum() (in module magnus.oscprob) osc_prob_3nu_vacuum_liv() (in module magnus.oscprob) osc_prob_3nu_vacuum_std() (in module magnus.oscprobstd)

osc_prob_4nu_earth() (in module magnus.oscprob) osc_prob_4nu_earth_liv() (in module magnus.oscprob) osc_prob_4nu_earth_nsi() (in module magnus.oscprob) osc_prob_4nu_matter_constant_density() (in module magnus.oscprob) osc_prob_4nu_matter_exp_density() (in module magnus.oscprob) osc_prob_4nu_matter_liv_constant_density() (in module magnus.oscprob) osc_prob_4nu_matter_liv_exp_density() (in module magnus.oscprob) osc_prob_4nu_matter_nsi_constant_density() (in module magnus.oscprob) osc_prob_4nu_matter_nsi_exp_density() (in module magnus.oscprob) osc_prob_4nu_sun() (in module magnus.oscprob) osc_prob_4nu_sun_liv() (in module magnus.oscprob) osc_prob_4nu_sun_nsi() (in module magnus.oscprob) osc_prob_4nu_vacuum() (in module magnus.oscprob) osc_prob_4nu_vacuum_liv() (in module magnus.oscprob) osc_prob_5nu_earth() (in module magnus.oscprob) osc_prob_5nu_earth_liv() (in module magnus.oscprob) osc_prob_5nu_earth_nsi() (in module magnus.oscprob) osc_prob_5nu_matter_constant_density() (in module magnus.oscprob) osc_prob_5nu_matter_exp_density() (in module magnus.oscprob) osc_prob_5nu_matter_liv_constant_density() (in module magnus.oscprob) osc_prob_5nu_matter_liv_exp_density() (in module magnus.oscprob) osc_prob_5nu_matter_nsi_constant_density() (in module magnus.oscprob) osc_prob_5nu_matter_nsi_exp_density() (in module magnus.oscprob) osc_prob_5nu_sun() (in module magnus.oscprob) osc_prob_5nu_sun_liv() (in module magnus.oscprob) osc_prob_5nu_sun_nsi() (in module magnus.oscprob) osc_prob_5nu_vacuum() (in module magnus.oscprob) osc_prob_5nu_vacuum_liv() (in module magnus.oscprob) osc_prob_earth() (in module magnus.oscprob) osc_prob_energy_baseline() (in module magnus.oscprob) osc_prob_liv() (in module magnus.oscprob) osc_prob_matter_nsi() (in module magnus.oscprob) osc_prob_matter_std_potential() (in module magnus.oscprob) osc_prob_sun() (in module magnus.oscprob) osc_prob_vacuum() (in module magnus.oscprob) oscillation_sampling() (in module magnus.adiabatic) OUTPUT_GUARD_MIN_BYTES (in module magnus.oscprob) OUTPUT_GUARD_SAFETY (in module magnus.oscprob)

P

palindromic() (in module magnus.magnus) PARAMETER_SET_METADATA_KEYS (in module magnus.oscprob) PhaseAveragingWarning plot_biprobability() (in module magnus.plotting) plot_curves() (in module magnus.plotting) plot_curves_stacked() (in module magnus.plotting) plot_oscillogram() (in module magnus.plotting) plot_probability_vs_baseline() (in module magnus.plotting) plot_probability_vs_energy() (in module magnus.plotting)

plot_probability_with_average() (in module magnus.plotting) plot_probability_with_profile() (in module magnus.plotting) pmns_mixing_matrix() (in module magnus.hamiltonians.hamiltonians3nu) PREM_BOUNDARIES (in module magnus.earth) prem_layer_edges_along_chord() (in module magnus.earth) print_banner() (in module magnus.oscprob) print_magnus_terms() (in module magnus.expansionterms) print_run_parameters() (in module magnus.oscprob) prob_label() (in module magnus.plotting) probe_eval_mode() (in module magnus.magnus)

R

RESOLUTION_RATIO (in module magnus.adiabatic)

S

S12_IO_BF_NUFIT_6_0 (in module magnus.globaldefs) S12_NO_BF_NUFIT_6_0 (in module magnus.globaldefs) S13_IO_BF_NUFIT_6_0 (in module magnus.globaldefs) S13_NO_BF_NUFIT_6_0 (in module magnus.globaldefs) S23_IO_BF_NUFIT_6_0 (in module magnus.globaldefs) S23_NO_BF_NUFIT_6_0 (in module magnus.globaldefs) ScalarHamiltonianWarning set_color_output() (in module magnus.globaldefs)

SEV_TOL (in module magnus.expmkernels) SQRT_OF_2 (in module magnus.globaldefs) suggest_n_slabs() (in module magnus.magnus) SUN_RADIUS (in module magnus.globaldefs) supports_dim() (in module magnus.expmkernels) SXI12 (in module magnus.globaldefs) SXI13 (in module magnus.globaldefs) SXI23 (in module magnus.globaldefs)

T

Term (in module magnus.expansionterms) THRESHOLD0_PROVENANCE (in module magnus.adiabatic)

TOL_MSG_IN_COLOR (in module magnus.globaldefs) TOL_MSG_NO_COLOR (in module magnus.globaldefs) ToleranceNotAchievedWarning

U

UNIT_CM (in module magnus.globaldefs) UNIT_CM3 (in module magnus.globaldefs) UNIT_EEV (in module magnus.globaldefs) UNIT_G_PER_CM3 (in module magnus.globaldefs) UNIT_GEV (in module magnus.globaldefs) UNIT_KEV (in module magnus.globaldefs) UNIT_KM (in module magnus.globaldefs) UNIT_MEV (in module magnus.globaldefs)

UNIT_PER_CM3 (in module magnus.globaldefs) UNIT_PEV (in module magnus.globaldefs) UNIT_TEV (in module magnus.globaldefs) UnmarkedDiscontinuityWarning unpack_liv_params_from_dict() (in module magnus.oscprob) unpack_nsi_params_from_dict() (in module magnus.oscprob) unpack_oscillation_params_from_dict() (in module magnus.oscprob) USE_PALINDROME (in module magnus.magnus)

V

valid_expm_backends (in module magnus.magnus) valid_flavor_indices_2nu() (in module magnus.oscprob) valid_integration_methods (in module magnus.magnus) validate_input_battery() (in module magnus.oscprob)

validate_input_osc_prob_earth() (in module magnus.oscprob) values_to_unspecified_osc_params() (in module magnus.oscprob) VCC_EARTH_CRUST (in module magnus.globaldefs) VCC_func() (in module magnus.matter) vcc_func_from_rho_func() (in module magnus.matter)

W

WARNING_MSG_IN_COLOR (in module magnus.globaldefs)

WARNING_MSG_NO_COLOR (in module magnus.globaldefs) Word (in module magnus.expansionterms)